PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1637s0006.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YC
Protein Properties Length: 207aa    MW: 23100.8 Da    PI: 9.7697
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1637s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC50.16.2e-161001881199
                NF-YC  11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                          + ++d k  ++P+ ri++i+++d+   +i  +a  l+ ka e+fi  +t  ++  + + k++ ++   ++++v++ + ++fl d vp++
  Cagra.1637s0006.1.p 100 GGVEDAKMFRFPMNRIRRIMRTDNSAPQIMQDAVFLVNKATEMFIERFTEEAYESSVQDKKKFIHYKHLSSVVSEDERYEFLADCVPEK 188
                          467899999*****************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.95E-1993187IPR009072Histone-fold
PfamPF008081.1E-21109172IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-24110187IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MVSSKKPIEK KARSDGVSKT GGRSTRSSGS KAKKTTNKVN IVKKQPEIHE ISDSSSSDSV  60
EDANRRDEPK KSNGVVSKGR NGTGGGNSKK TSKNREEEDG GVEDAKMFRF PMNRIRRIMR  120
TDNSAPQIMQ DAVFLVNKAT EMFIERFTEE AYESSVQDKK KFIHYKHLSS VVSEDERYEF  180
LADCVPEKLK AEVALEEWER GMTDAG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0868150.0AY086815.1 Arabidopsis thaliana clone 28026 mRNA, complete sequence.
GenBankBT0252660.0BT025266.1 Arabidopsis thaliana At1g07980 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458017.11e-108PREDICTED: uncharacterized protein LOC104739381
TrEMBLQ0WP191e-105Q0WP19_ARATH; Putative uncharacterized protein At1g07980
STRINGfgenesh1_pg.C_scaffold_10006501e-103(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111902231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.13e-74nuclear factor Y, subunit C10